pyrexMD.core
------------

.. automodule:: pyrexMD.core
   :members:
   :undoc-members:
   :show-inheritance:

pyrexMD.gmx
-----------

.. automodule:: pyrexMD.gmx
   :members:
   :undoc-members:
   :show-inheritance:


pyrexMD.rex
-----------

.. automodule:: pyrexMD.rex
   :members:
   :undoc-members:
   :show-inheritance:

pyrexMD.topology
----------------

.. automodule:: pyrexMD.topology
   :members:
   :undoc-members:
   :show-inheritance:


Subpackages
-----------

.. toctree::
   :maxdepth: 2

   pyrexMD.analysis
   pyrexMD.decoy
   pyrexMD.misc